Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00568.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4106
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35


Found at i:2772 original size:119 final size:116

Alignment explanation


    Indices: 2519--2860  Score: 328
    Period size: 119  Copynumber: 2.9  Consensus size: 116

       2509 TGTGTGTCTG

                 *     *                                          *          
       2519 TGTACTATGACTAATTGCATTTATTGTTACTTTAAAATGTAAATATTTGAATTTCATGATTTTTG
          1 TGTACAATGACAAATTGCATTTATTGTTAC-TTAAAATGTAAATATTTGAATTTTATGA-TTTTG

                         **   *                                  *
       2584 ACATAAGGTACCAGGGTTCGATCTGTCTCTGAGACAAAGACAGATTCGCTTGTG
         64 ACATAAGGTACCAATGTTTGATCTGTCTCTGAGACAAAGACAGATTCGC-TGTC

               * *   *                  *                            *       
       2638 TGTTCTATGGCAAATTGCATTTATTGTTGCTGTAAAATGTAAATATTTGAATTTTATCATTTTGA
          1 TGTACAATGACAAATTGCATTTATTGTTACT-TAAAATGTAAATATTTGAATTTTATGATTTTGA

                               *         *         *    *           
       2703 CATAAGGTACCAATGTTTGGTCCATGTCTGTGAGACCAAGGACATATAT-G-TGTC
         65 CATAAGGTACCAATGTTTGAT-C-TGTCTCTGAGA-CAAAGACAGAT-TCGCTGTC

                      *     * *                 *      *       *             
       2757 TGTACAATGATAAATTCCTTTTATTGTTACTTCAAAGTGTAAAGATTTGAAATTTATGATTTTGA
          1 TGTACAATGACAAATTGCATTTATTGTTACTT-AAAATGTAAATATTTGAATTTTATGATTTTGA

            *        *  *       **        *   *    
       2822 GATAAGGTAGCATTGTTTGAGATGTCTCTGGGACCAAGA
         65 CATAAGGTACCAATGTTTGATCTGTCTCTGAGACAAAGA

       2861 ATTATGTCAT


Statistics
Matches: 182,  Mismatches: 35, Indels: 15
        0.78            0.15        0.06

Matches are distributed among these distances:
 116    4  0.02
 117    9  0.05
 118   25  0.14
 119  123  0.68
 120   10  0.05
 121   10  0.05
 122    1  0.01

ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39


Consensus pattern (116 bp):   
TGTACAATGACAAATTGCATTTATTGTTACTTAAAATGTAAATATTTGAATTTTATGATTTTGAC
ATAAGGTACCAATGTTTGATCTGTCTCTGAGACAAAGACAGATTCGCTGTC
Done.