Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga14g00577.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 541
Length: 902
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Found at i:244 original size:81 final size:81
Alignment explanation
Indices: 141--324 Score: 314
Period size: 81 Copynumber: 2.3 Consensus size: 81
131 GGATCTGAAA
* * *
141 CATGATCTTCAACGGCAGCAAGATCGGAAACATGATCTTCAACGGTAACAAGCTTGGCGGTGAAG
1 CATGATCTTCAACGGTAACAAGATCCGAAACATGATCTTCAACGGTAACAAGCTTGGCGGTGAAG
*
206 TTTGAAATATACGAAG
66 TTTAAAATATACGAAG
*
222 CATGATCTTCAACGGTAACAAGATCCGAAACATGATCTTCAGCGGTAACAAGCTTGGCGGTGAAG
1 CATGATCTTCAACGGTAACAAGATCCGAAACATGATCTTCAACGGTAACAAGCTTGGCGGTGAAG
*
287 TTTAAAATATCCGAAG
66 TTTAAAATATACGAAG
303 CATGATCTTCAACGGTAACAAG
1 CATGATCTTCAACGGTAACAAG
325 CTTGGCGGTG
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 97 1.00
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.23
Consensus pattern (81 bp):
CATGATCTTCAACGGTAACAAGATCCGAAACATGATCTTCAACGGTAACAAGCTTGGCGGTGAAG
TTTAAAATATACGAAG
Found at i:258 original size:30 final size:30
Alignment explanation
Indices: 217--273 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
207 TTGAAATATA
*
217 CGAAGCATGATCTTCAACGGTAACAAGATC
1 CGAAACATGATCTTCAACGGTAACAAGATC
*
247 CGAAACATGATCTTCAGCGGTAACAAG
1 CGAAACATGATCTTCAACGGTAACAAG
274 CTTGGCGGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (30 bp):
CGAAACATGATCTTCAACGGTAACAAGATC
Done.