Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga14g00577.F2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 729
Length: 1215
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.39
Found at i:571 original size:30 final size:30
Alignment explanation
Indices: 530--586 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
520 TTGAAATATA
*
530 CGAAGCATGATCTTCAACGGTAACAAGATC
1 CGAAACATGATCTTCAACGGTAACAAGATC
*
560 CGAAACATGATCTTCAGCGGTAACAAG
1 CGAAACATGATCTTCAACGGTAACAAG
587 CTTGGCGGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (30 bp):
CGAAACATGATCTTCAACGGTAACAAGATC
Found at i:573 original size:81 final size:81
Alignment explanation
Indices: 454--637 Score: 314
Period size: 81 Copynumber: 2.3 Consensus size: 81
444 AGATCTGAAA
* * *
454 CATGATCTTCAACGGCAGCAAGATCGGAAACATGATCTTCAACGGTAACAAGCTTGGCGGTGAAG
1 CATGATCTTCAACGGTAACAAGATCCGAAACATGATCTTCAACGGTAACAAGCTTGGCGGTGAAG
*
519 TTTGAAATATACGAAG
66 TTTAAAATATACGAAG
*
535 CATGATCTTCAACGGTAACAAGATCCGAAACATGATCTTCAGCGGTAACAAGCTTGGCGGTGAAG
1 CATGATCTTCAACGGTAACAAGATCCGAAACATGATCTTCAACGGTAACAAGCTTGGCGGTGAAG
*
600 TTTAAAATATCCGAAG
66 TTTAAAATATACGAAG
616 CATGATCTTCAACGGTAACAAG
1 CATGATCTTCAACGGTAACAAG
638 CTTGGCGGTG
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 97 1.00
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.23
Consensus pattern (81 bp):
CATGATCTTCAACGGTAACAAGATCCGAAACATGATCTTCAACGGTAACAAGCTTGGCGGTGAAG
TTTAAAATATACGAAG
Done.