Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00596.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3115
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31


Found at i:2047 original size:23 final size:23

Alignment explanation


    Indices: 2017--2063  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       2007 TCGAGAAAGG

                                   
       2017 ATTGATCGGGCTTTTGTGAATTT
          1 ATTGATCGGGCTTTTGTGAATTT

                                   
       2040 ATTGATCGGGCTTTTGTGAATTT
          1 ATTGATCGGGCTTTTGTGAATTT

             
       2063 A
          1 A

       2064 GAATGATGGG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.19, C:0.09, G:0.26, T:0.47


Consensus pattern (23 bp):   
ATTGATCGGGCTTTTGTGAATTT
Done.