Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00598.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1964
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29


Found at i:1527 original size:18 final size:18

Alignment explanation


    Indices: 1504--1544  Score: 57
    Period size: 18  Copynumber: 2.3  Consensus size: 18

       1494 CAGGAATGGA

                               
       1504 AGAGAAAGAAGC-AGAGAT
          1 AGAGAAAGAAGCAAGA-AT

                    *         
       1522 AGAGAAAGTAGCAAGAAT
          1 AGAGAAAGAAGCAAGAAT

                 
       1540 AGAGA
          1 AGAGA

       1545 GCATGAAGAT


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  18   18  0.86
  19    3  0.14

ACGTcount: A:0.56, C:0.05, G:0.32, T:0.07


Consensus pattern (18 bp):   
AGAGAAAGAAGCAAGAAT
Done.