Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00601.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 955

Length: 1592
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27


Found at i:1349 original size:14 final size:15

Alignment explanation


    Indices: 1330--1363  Score: 52
    Period size: 14  Copynumber: 2.3  Consensus size: 15

       1320 CGTGGCTGAC

                        *  
       1330 TTATAAAGCT-ATTT
          1 TTATAAAGCTCAATT

                           
       1344 TTATAAAGCTCAATT
          1 TTATAAAGCTCAATT

                 
       1359 TTATA
          1 TTATA

       1364 TATATTATAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  14   10  0.56
  15    8  0.44

ACGTcount: A:0.38, C:0.09, G:0.06, T:0.47


Consensus pattern (15 bp):   
TTATAAAGCTCAATT

Done.