Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00603.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3929
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33


Found at i:2856 original size:15 final size:16

Alignment explanation


    Indices: 2828--2864  Score: 58
    Period size: 15  Copynumber: 2.4  Consensus size: 16

       2818 AACTTGAAAG

                            
       2828 ACTTGAACCCAAAACA
          1 ACTTGAACCCAAAACA

            *               
       2844 GCTTGAA-CCAAAACA
          1 ACTTGAACCCAAAACA

                  
       2859 ACTTGA
          1 ACTTGA

       2865 TCCTGGAATT


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  15   13  0.68
  16    6  0.32

ACGTcount: A:0.46, C:0.27, G:0.11, T:0.16


Consensus pattern (16 bp):   
ACTTGAACCCAAAACA
Done.