Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00607.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4070
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34


Found at i:1638 original size:21 final size:20

Alignment explanation


    Indices: 1590--1639  Score: 91
    Period size: 20  Copynumber: 2.5  Consensus size: 20

       1580 TAAAAGAGAT

                                
       1590 CTAGGTTTCTCTAATGAGTC
          1 CTAGGTTTCTCTAATGAGTC

                                
       1610 CTAGGTTTCTCTAATGAGTC
          1 CTAGGTTTCTCTAATGAGTC

                      
       1630 CTAAGGTTTC
          1 CT-AGGTTTC

       1640 AGACTACGCT


Statistics
Matches: 29,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
  20   22  0.76
  21    7  0.24

ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40


Consensus pattern (20 bp):   
CTAGGTTTCTCTAATGAGTC
Done.