Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00625.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4606
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27


Found at i:1678 original size:6 final size:6

Alignment explanation


    Indices: 1667--1697  Score: 62
    Period size: 6  Copynumber: 5.2  Consensus size: 6

       1657 CTGATTGCAT

                                                
       1667 AGATGA AGATGA AGATGA AGATGA AGATGA A
          1 AGATGA AGATGA AGATGA AGATGA AGATGA A

       1698 ACCTCAAAGG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.52, C:0.00, G:0.32, T:0.16


Consensus pattern (6 bp):   
AGATGA

Done.