Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00634.F9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3925
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30


Found at i:261 original size:37 final size:36

Alignment explanation


    Indices: 217--288  Score: 126
    Period size: 37  Copynumber: 2.0  Consensus size: 36

        207 TTTTTATCAG

                                    *            
        217 AGCTTGAATCTGGGTTTTTGGGGTTCTTTTCATTTGT
          1 AGCTTGAATCTGGGTTTTTGGGGTAC-TTTCATTTGT

                                               
        254 AGCTTGAATCTGGGTTTTTGGGGTACTTTCATTTG
          1 AGCTTGAATCTGGGTTTTTGGGGTACTTTCATTTG

        289 CAGGAGTTGT


Statistics
Matches: 34,  Mismatches: 1, Indels: 1
        0.94            0.03        0.03

Matches are distributed among these distances:
  36    9  0.26
  37   25  0.74

ACGTcount: A:0.12, C:0.11, G:0.28, T:0.49


Consensus pattern (36 bp):   
AGCTTGAATCTGGGTTTTTGGGGTACTTTCATTTGT
Done.