Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00642.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2142
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.33


Found at i:1168 original size:122 final size:122

Alignment explanation


    Indices: 1008--1252  Score: 418
    Period size: 122  Copynumber: 2.0  Consensus size: 122

        998 ATAGATGCTC

                       *                                                     
       1008 TATAAGATTAAGGTTGTCTTCTTGGAATTATGGTTGGGAGGAAATTTTGATATTTTAGAGTATGT
          1 TATAAGATTAAAGTTGTCTTCTTGGAATTATGGTTGGGAGGAAATTTTGATATTTTAGAGTATGT

              *     *                                         *      
       1073 TTTAATCCGGGTAAAACCTTAGAGAAAGAGTGAACTAACCTTCCATATATTTTTTTA
         66 TTCAATCCAGGTAAAACCTTAGAGAAAGAGTGAACTAACCTTCCATATATATTTTTA

                                                       *                     
       1130 TATAAGATTAAAGTTGTCTTCTTGGAATTATGGTTGGGAGGAAGTTTTGATATTTTAGAGTATGT
          1 TATAAGATTAAAGTTGTCTTCTTGGAATTATGGTTGGGAGGAAATTTTGATATTTTAGAGTATGT

                                *                      *    *        
       1195 TTCAATCCAGGTAAAACCTTGGAGAAAGAGTGAACTAACCTTCTATATCTATTTTTA
         66 TTCAATCCAGGTAAAACCTTAGAGAAAGAGTGAACTAACCTTCCATATATATTTTTA

             
       1252 T
          1 T

       1253 TGTATCATTC


Statistics
Matches: 115,  Mismatches: 8, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
 122  115  1.00

ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39


Consensus pattern (122 bp):   
TATAAGATTAAAGTTGTCTTCTTGGAATTATGGTTGGGAGGAAATTTTGATATTTTAGAGTATGT
TTCAATCCAGGTAAAACCTTAGAGAAAGAGTGAACTAACCTTCCATATATATTTTTA
Done.