Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00647.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2618
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30


Found at i:44 original size:6 final size:6

Alignment explanation


    Indices: 33--65  Score: 52
    Period size: 6  Copynumber: 5.8  Consensus size: 6

         23 TCTGTACCTT

                                                    
         33 TTTCCC TTTCCC TTTCCC TTT-CC TTT-CC TTTCC
          1 TTTCCC TTTCCC TTTCCC TTTCCC TTTCCC TTTCC

         66 TTTTGTTATC


Statistics
Matches: 26,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   5   10  0.38
   6   16  0.62

ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55


Consensus pattern (6 bp):   
TTTCCC

Done.