Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00658.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2455
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35


Found at i:2116 original size:43 final size:43

Alignment explanation


    Indices: 2059--2158  Score: 114
    Period size: 43  Copynumber: 2.3  Consensus size: 43

       2049 GTTTGTTTGA

                    *         *  *  *                   
       2059 AAAAAACGCCGCTAAAGATCAGGATTTTTAGCGGC-ATTATTTT
          1 AAAAAACGACGCTAAAGACCAAGACTTTTAGCGGCGATT-TTTT

                     *                          *      
       2102 AAAAAACGATGCTAAAGACCAAGACTTTTAGCGGCGCTTTTTT
          1 AAAAAACGACGCTAAAGACCAAGACTTTTAGCGGCGATTTTTT

                    *      
       2145 -AAAAACGCCGCTAA
          1 AAAAAACGACGCTAA

       2159 TTTGCCCAGT


Statistics
Matches: 48,  Mismatches: 8, Indels: 3
        0.81            0.14        0.05

Matches are distributed among these distances:
  42   12  0.25
  43   34  0.71
  44    2  0.04

ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26


Consensus pattern (43 bp):   
AAAAAACGACGCTAAAGACCAAGACTTTTAGCGGCGATTTTTT
Done.