Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00663.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 535

Length: 892
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.29


Found at i:558 original size:60 final size:60

Alignment explanation


    Indices: 465--584  Score: 240
    Period size: 60  Copynumber: 2.0  Consensus size: 60

        455 TGCTTGCTTG

                                                                        
        465 TAGCAGCTTTAATGTTCAAGGTTGTTTCTTTCCTGAATAGGGGCCTAATGGTAATGCATC
          1 TAGCAGCTTTAATGTTCAAGGTTGTTTCTTTCCTGAATAGGGGCCTAATGGTAATGCATC

                                                                        
        525 TAGCAGCTTTAATGTTCAAGGTTGTTTCTTTCCTGAATAGGGGCCTAATGGTAATGCATC
          1 TAGCAGCTTTAATGTTCAAGGTTGTTTCTTTCCTGAATAGGGGCCTAATGGTAATGCATC

        585 GATGACAAAT


Statistics
Matches: 60,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  60   60  1.00

ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37


Consensus pattern (60 bp):   
TAGCAGCTTTAATGTTCAAGGTTGTTTCTTTCCTGAATAGGGGCCTAATGGTAATGCATC
Done.