Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00679.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2110
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.27


Found at i:1161 original size:201 final size:201

Alignment explanation


    Indices: 833--1194  Score: 453
    Period size: 201  Copynumber: 1.8  Consensus size: 201

        823 GTGTTGATGT

                         *          *         *        *                     
        833 CATAAGGAAAGAACAATCCAATGAGCAAAACATCTCAAGAGCTCATGGGTTTGAAAATGTTCGGA
          1 CATAAGGAAAGAAAAATCCAATGAACAAAACATCCCAAGAGCTAATGGGTTTGAAAATGTTCGGA

              *      *           *                    *    **      *        *
        898 ACGGAGAAATGATGGAGGAAGTTGAAGAAGATTCTTCTGATAGTGGAGGCGATGACATTGGTGAG
         66 ACAGAGAAAGGATGGAGGAAGATGAAGAAGATTCTTCTGATAATGGAAACGATGAAATTGGTGAC

             *                                                               
        963 GGCCAACAGCAA-AAGCGACCATCCAGTTCAAGCGGTGTAAGAACTGTAGAAGAAACACAGGGTG
        131 GACCAACAGCAATAA-CGACCATCCAGTTCAAGCGGTGTAAGAACTGTAGAAGAAACACAGGGTG

                   
       1027 TTGCATC
        195 TTGCATC

                              **           *      *                       *  
       1034 CATAAGGAAAGAAAAATCTGATGAACAAAACCTCCCTATG-GCTAATGGGTTTGAAAATGTTGGG
          1 CATAAGGAAAGAAAAATCCAATGAACAAAACATCCC-AAGAGCTAATGGGTTTGAAAATGTTCGG

                                                                * *          
       1098 AACAGAGAAAGGATGGAGGAAGAT-ATAGAA-ATTTCTTCTGATAATGGAAATGCTGAAATTGGT
         65 AACAGAGAAAGGATGGAGGAAGATGA-AGAAGA-TTCTTCTGATAATGGAAACGATGAAATTGGT

                   *        *         *       
       1161 GACGACCGACAGCAATTACGACCATCTAGTTCAA
        128 GACGACCAACAGCAATAACGACCATCCAGTTCAA

       1195 AAGTGCCTGT


Statistics
Matches: 134,  Mismatches: 23, Indels: 8
        0.81            0.14        0.05

Matches are distributed among these distances:
 200    2  0.01
 201  129  0.96
 202    3  0.02

ACGTcount: A:0.38, C:0.15, G:0.26, T:0.21


Consensus pattern (201 bp):   
CATAAGGAAAGAAAAATCCAATGAACAAAACATCCCAAGAGCTAATGGGTTTGAAAATGTTCGGA
ACAGAGAAAGGATGGAGGAAGATGAAGAAGATTCTTCTGATAATGGAAACGATGAAATTGGTGAC
GACCAACAGCAATAACGACCATCCAGTTCAAGCGGTGTAAGAACTGTAGAAGAAACACAGGGTGT
TGCATC
Done.