Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00686.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 244

Length: 408
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30


Found at i:362 original size:36 final size:36

Alignment explanation


    Indices: 315--388  Score: 148
    Period size: 36  Copynumber: 2.1  Consensus size: 36

        305 GCAGTTGGAC

                                                
        315 GTCAATTTCAGGTGAGATTGGCACTTCCTTGCTTGA
          1 GTCAATTTCAGGTGAGATTGGCACTTCCTTGCTTGA

                                                
        351 GTCAATTTCAGGTGAGATTGGCACTTCCTTGCTTGA
          1 GTCAATTTCAGGTGAGATTGGCACTTCCTTGCTTGA

              
        387 GT
          1 GT

        389 TAAAGCACTT


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   38  1.00

ACGTcount: A:0.19, C:0.19, G:0.26, T:0.36


Consensus pattern (36 bp):   
GTCAATTTCAGGTGAGATTGGCACTTCCTTGCTTGA
Done.