Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00689.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3415
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27


Found at i:3144 original size:36 final size:36

Alignment explanation


    Indices: 3067--3136  Score: 104
    Period size: 36  Copynumber: 1.9  Consensus size: 36

       3057 CTGCACATAA

                           *                    
       3067 ATTTCCAGTCCCAGTGAACCCAATGATGAAACAAAC
          1 ATTTCCAGTCCCAGTAAACCCAATGATGAAACAAAC

                     *        *         *     
       3103 ATTTCCAGTTCCAGTAAATCCAATGATGCAACAA
          1 ATTTCCAGTCCCAGTAAACCCAATGATGAAACAA

       3137 GCTTTTCCTG


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  36   30  1.00

ACGTcount: A:0.39, C:0.26, G:0.13, T:0.23


Consensus pattern (36 bp):   
ATTTCCAGTCCCAGTAAACCCAATGATGAAACAAAC
Done.