Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00694.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4750
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32


Found at i:1065 original size:72 final size:72

Alignment explanation


    Indices: 959--1098  Score: 199
    Period size: 72  Copynumber: 1.9  Consensus size: 72

        949 ATTTACCCAG

                  *       ** *           *                 *                 
        959 TTTTTTGGTAAAAGGGGTCAAATACATTCTAACCCCTAATACAATGGTCTTCATGGTACTTTTAC
          1 TTTTTTAGTAAAAGAAGCCAAATACATTCCAACCCCTAATACAATGGCCTTCATGGTACTTTTAC

                   
       1024 CTAACTT
         66 CTAACTT

                                    *            *       *                   
       1031 TTTTTTAGTAAAAGAAGCCAAATATATTCCAACCCCTCATACAATTGCCTTCATGGTACTTTTAC
          1 TTTTTTAGTAAAAGAAGCCAAATACATTCCAACCCCTAATACAATGGCCTTCATGGTACTTTTAC

               
       1096 CTA
         66 CTA

       1099 GCCAATATGT


Statistics
Matches: 59,  Mismatches: 9, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  72   59  1.00

ACGTcount: A:0.31, C:0.21, G:0.11, T:0.36


Consensus pattern (72 bp):   
TTTTTTAGTAAAAGAAGCCAAATACATTCCAACCCCTAATACAATGGCCTTCATGGTACTTTTAC
CTAACTT
Done.