Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01012.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3124
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36


Found at i:99 original size:3 final size:3

Alignment explanation


    Indices: 86--144  Score: 73
    Period size: 3  Copynumber: 19.3  Consensus size: 3

         76 TTACTTAGTA

                 *                                                *     
         86 CTT CGT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTTT CTT CAT CTT
          1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C-TT CTT CTT CTT

             *       *       
        132 CAT CTT CAT CTT C
          1 CTT CTT CTT CTT C

        145 ATTTCAGTGT


Statistics
Matches: 47,  Mismatches: 8, Indels: 2
        0.82            0.14        0.04

Matches are distributed among these distances:
   3   44  0.94
   4    3  0.06

ACGTcount: A:0.05, C:0.34, G:0.02, T:0.59


Consensus pattern (3 bp):   
CTT

Done.