Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00703.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2249
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31


Found at i:775 original size:23 final size:23

Alignment explanation


    Indices: 749--795  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        739 CTCTAAAACT

                                   
        749 ATGTTCATAACTGTTTATGTTCA
          1 ATGTTCATAACTGTTTATGTTCA

                                   
        772 ATGTTCATAACTGTTTATGTTCA
          1 ATGTTCATAACTGTTTATGTTCA

             
        795 A
          1 A

        796 ATGGGTGCTC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.28, C:0.13, G:0.13, T:0.47


Consensus pattern (23 bp):   
ATGTTCATAACTGTTTATGTTCA
Done.