Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00712.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 253
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.23


Found at i:136 original size:21 final size:21

Alignment explanation


    Indices: 112--190  Score: 86
    Period size: 21  Copynumber: 3.8  Consensus size: 21

        102 CAATGTGCCC

                     *        *  
        112 CCTCCACACTGGCGTGTGGGG
          1 CCTCCACACGGGCGTGTGAGG

                         *   *   
        133 CCTCCACACGGGCATGTAAGG
          1 CCTCCACACGGGCGTGTGAGG

               *        *     *  
        154 CCTTCACACGGGTGTGTGTGG
          1 CCTCCACACGGGCGTGTGAGG

                    *       
        175 CCTCCACATGGGCGTG
          1 CCTCCACACGGGCGTG

        191 AAGACCCCTA


Statistics
Matches: 46,  Mismatches: 12, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  21   46  1.00

ACGTcount: A:0.14, C:0.32, G:0.34, T:0.20


Consensus pattern (21 bp):   
CCTCCACACGGGCGTGTGAGG
Done.