Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00726.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4672
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.29


Found at i:2341 original size:58 final size:58

Alignment explanation


    Indices: 2223--2341  Score: 150
    Period size: 58  Copynumber: 2.1  Consensus size: 58

       2213 TCAGATGGAA

                     *                       *           *      **    
       2223 ACAGAATCAGATTTTCCTGAAGCTGGAGCAACTGCTCATGTGCAATTCAATATGACTG
          1 ACAGAATCAAATTTTCCTGAAGCTGGAGCAACTACTCATGTGCAACTCAATACAACTG

                           *                                    *   *  
       2281 ACAGAATCAAATTTTTCTGAAGCTGGAGCAACTACTCATGTAG-AACTCAATCCAAGTG
          1 ACAGAATCAAATTTTCCTGAAGCTGGAGCAACTACTCATGT-GCAACTCAATACAACTG

               
       2339 ACA
          1 ACA

       2342 TTTATCCCAG


Statistics
Matches: 52,  Mismatches: 8, Indels: 2
        0.84            0.13        0.03

Matches are distributed among these distances:
  58   51  0.98
  59    1  0.02

ACGTcount: A:0.34, C:0.21, G:0.18, T:0.26


Consensus pattern (58 bp):   
ACAGAATCAAATTTTCCTGAAGCTGGAGCAACTACTCATGTGCAACTCAATACAACTG
Done.