Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00748.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 451

Length: 753
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40


Found at i:428 original size:14 final size:15

Alignment explanation


    Indices: 403--435  Score: 50
    Period size: 14  Copynumber: 2.3  Consensus size: 15

        393 AACTTAAAAA

                        *  
        403 TGTTTCTTTTGTGTT
          1 TGTTTCTTTTGTCTT

                           
        418 TGTTT-TTTTGTCTT
          1 TGTTTCTTTTGTCTT

                
        432 TGTT
          1 TGTT

        436 GTTCTCATTG


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  14   12  0.71
  15    5  0.29

ACGTcount: A:0.00, C:0.06, G:0.18, T:0.76


Consensus pattern (15 bp):   
TGTTTCTTTTGTCTT
Done.