Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00758.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4984
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30


Found at i:225 original size:18 final size:18

Alignment explanation


    Indices: 133--219  Score: 120
    Period size: 18  Copynumber: 4.8  Consensus size: 18

        123 CCCAACTACT

                       *      
        133 GTATACGTGAACAGTGCC
          1 GTATACGTGAATAGTGCC

                    *         
        151 GTATACGTAAATAGTGCC
          1 GTATACGTGAATAGTGCC

                  *         * 
        169 GTATACATGAATAGTGTC
          1 GTATACGTGAATAGTGCC

                 **           
        187 GTATATATGAATAGTGCC
          1 GTATACGTGAATAGTGCC

                           
        205 GTATACGTGAATAGT
          1 GTATACGTGAATAGT

        220 ATCGTAAACG


Statistics
Matches: 60,  Mismatches: 9, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  18   60  1.00

ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30


Consensus pattern (18 bp):   
GTATACGTGAATAGTGCC
Done.