Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00761.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4620
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32


Found at i:3324 original size:213 final size:213

Alignment explanation


    Indices: 2308--3322  Score: 1442
    Period size: 213  Copynumber: 4.8  Consensus size: 213

       2298 TTTCCAATAA

                                       *     **                              
       2308 TCATGGACACCATGGAGA-GTTTGAGGCATCTTTCTTTAAGCGGAACGGCTTTGAAGGAATTACC
          1 TCATGGACACCATGGAGATG-TTGAGGGATCTTGATTTAAGCGGAACGGCTTTGAAGGAATTACC

                   *   **  *            *                                    
       2372 ATCCTCAATTGAAAACCTTATTGGTCTTAAGCAATTGAGATTGAAAAACTGTGAAAACCTTGTTT
         65 ATCCTCATTTGGCAATCTTATTGGTCTTGAGCAATTGAGATTGAAAAACTGTGAAAACCTTGTTT

                                               *           *                 
       2437 GCCTTCCTGACAGCTTTTATAAATTGAAATCTCTCGAGAGATTCGA-TCTTAAAGGTTGCTCAAG
        130 GCCTTCCTGACAGCTTTTATAAATTGAAATCTCTCAAGAGATTC-ACACTTAAAGGTTGCTCAAG

                               *
       2501 ATTGGAGATTTTCCCAGAAA
        194 ATTGGAGATTTTCCCAGAAG

                     *              **  *         * *       *      *         
       2521 TCATGGACATCATGGAGATGTTGATAGAACTTGATTTAGGTGGAACGGGTTTGAAAGAATTACCA
          1 TCATGGACACCATGGAGATGTTGAGGGATCTTGATTTAAGCGGAACGGCTTTGAAGGAATTACCA

                  *   **          *    * *                           *       
       2586 TCCTCAATTGATAATCTTATTGATCTTAATCAATTGAGATTGAAAAACTGTGAAAACTTTGTTTG
         66 TCCTCATTTGGCAATCTTATTGGTCTTGAGCAATTGAGATTGAAAAACTGTGAAAACCTTGTTTG

                        *                                                  * 
       2651 CCTTCCTGACAGTTTTTATAAATTGAAATCTCTCAAGAGATTCA-ATCTTAAAGGTTGCTCAATA
        131 CCTTCCTGACAGCTTTTATAAATTGAAATCTCTCAAGAGATTCACA-CTTAAAGGTTGCTCAAGA

                               
       2715 TTGGAGATTTTCCCAGAAG
        195 TTGGAGATTTTCCCAGAAG

                                      *                                      
       2734 TCATGGACACCATGGAGATGTTGAGGTATCTTGATTTAAGCGGAACGGCTTTGAAGGAATTACCA
          1 TCATGGACACCATGGAGATGTTGAGGGATCTTGATTTAAGCGGAACGGCTTTGAAGGAATTACCA

                                                               *    *        
       2799 TCCTCATTTGGCAATCTTATTGGTCTTGAGCAATTGAGATTGAAAAACTGTAAAAAGCTTGTTTG
         66 TCCTCATTTGGCAATCTTATTGGTCTTGAGCAATTGAGATTGAAAAACTGTGAAAACCTTGTTTG

                                        *     *   *     **              *    
       2864 CCTTCCTGACAGCTTTTATAAATTGAAACCTCTCGAGATATTCAGTCTTAAAGGTTGCTCGAGAT
        131 CCTTCCTGACAGCTTTTATAAATTGAAATCTCTCAAGAGATTCACACTTAAAGGTTGCTCAAGAT

             *                
       2929 TAGAGATTTTCCCAGAAG
        196 TGGAGATTTTCCCAGAAG

                   *               *                                         
       2947 TCATGGATACCATGGAGATGTTGTGGGATCTTGATTTAAGCGGAACGGCTTTGAAGGAATTACCA
          1 TCATGGACACCATGGAGATGTTGAGGGATCTTGATTTAAGCGGAACGGCTTTGAAGGAATTACCA

                                        *                      *    *        
       3012 TCCTCATTTGGCAATCTTATTGGTCTTGGGCAATTGAGATTGAAAAACTGTAAAAAGCTTGTTTG
         66 TCCTCATTTGGCAATCTTATTGGTCTTGAGCAATTGAGATTGAAAAACTGTGAAAACCTTGTTTG

                                  *          *    *       *  *          *    
       3077 CCTTCCTGACAGCTTTTATAAACTGAAATCTCTTAAGACATTCACAGTTCAAGGTTGCTCGAGAT
        131 CCTTCCTGACAGCTTTTATAAATTGAAATCTCTCAAGAGATTCACACTTAAAGGTTGCTCAAGAT

                              
       3142 TGGAGATTTTCCCAGAAG
        196 TGGAGATTTTCCCAGAAG

              *                                           *               *  
       3160 TCTTGGACACCATGGAGATGTTGAGGGATCTTGATTTAAGCGGAACAGCTTTGAAGGAATTATCA
          1 TCATGGACACCATGGAGATGTTGAGGGATCTTGATTTAAGCGGAACGGCTTTGAAGGAATTACCA

                                          *      *    * **                   
       3225 TCCTCATTTGGCAATCTTATTGGTCTTGAGAAATTGATATTGGACCACTGTGAAAACCTTGTTTG
         66 TCCTCATTTGGCAATCTTATTGGTCTTGAGCAATTGAGATTGAAAAACTGTGAAAACCTTGTTTG

                   *              *  *       
       3290 CCTTCCTTACAGCTTTTATAAACTGGAATCTCT
        131 CCTTCCTGACAGCTTTTATAAATTGAAATCTCT

       3323 TAGGAGACTT


Statistics
Matches: 723,  Mismatches: 76, Indels: 6
        0.90            0.09        0.01

Matches are distributed among these distances:
 212    1  0.00
 213  721  1.00
 214    1  0.00

ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33


Consensus pattern (213 bp):   
TCATGGACACCATGGAGATGTTGAGGGATCTTGATTTAAGCGGAACGGCTTTGAAGGAATTACCA
TCCTCATTTGGCAATCTTATTGGTCTTGAGCAATTGAGATTGAAAAACTGTGAAAACCTTGTTTG
CCTTCCTGACAGCTTTTATAAATTGAAATCTCTCAAGAGATTCACACTTAAAGGTTGCTCAAGAT
TGGAGATTTTCCCAGAAG
Done.