Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00765.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3705
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.31


Found at i:3688 original size:15 final size:15

Alignment explanation


    Indices: 3651--3689  Score: 60
    Period size: 15  Copynumber: 2.6  Consensus size: 15

       3641 TTTCAAACCC

                   *       
       3651 TAAATATGTTGTTAA
          1 TAAATATTTTGTTAA

                           
       3666 TAAATATTTTGTTAA
          1 TAAATATTTTGTTAA

              *      
       3681 TATATATTT
          1 TAAATATTT

       3690 ATCATAGGTT


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  15   22  1.00

ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54


Consensus pattern (15 bp):   
TAAATATTTTGTTAA
Done.