Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00766.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2251
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31


Found at i:1084 original size:15 final size:16

Alignment explanation


    Indices: 1051--1085  Score: 54
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       1041 AAACAAGTGC

                    *       
       1051 TTATCCAGTTTGACAT
          1 TTATCCAGATTGACAT

                            
       1067 TTATCCAGATTG-CAT
          1 TTATCCAGATTGACAT

                
       1082 TTAT
          1 TTAT

       1086 GAAGTGGAGG


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  15    7  0.39
  16   11  0.61

ACGTcount: A:0.26, C:0.17, G:0.11, T:0.46


Consensus pattern (16 bp):   
TTATCCAGATTGACAT
Done.