Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga14g00769.F3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4344
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Found at i:2929 original size:21 final size:21
Alignment explanation
Indices: 2888--2930 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
2878 GGTGATGCTA
* *
2888 CAAAAGATAGTTCTGCGGCTG
1 CAAAAGATAGTTCTCCAGCTG
*
2909 CAAAAGATTGTTCTCCAGCTG
1 CAAAAGATAGTTCTCCAGCTG
2930 C
1 C
2931 TGATAAACAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (21 bp):
CAAAAGATAGTTCTCCAGCTG
Found at i:4021 original size:63 final size:63
Alignment explanation
Indices: 3943--4070 Score: 256
Period size: 63 Copynumber: 2.0 Consensus size: 63
3933 CGGATGTCAC
3943 CTGGTTTGCGTCTTGCCTCCTGCTCCAAGTTCATCCTTCTGTGTTCCAGCATGATTTTCCTGG
1 CTGGTTTGCGTCTTGCCTCCTGCTCCAAGTTCATCCTTCTGTGTTCCAGCATGATTTTCCTGG
4006 CTGGTTTGCGTCTTGCCTCCTGCTCCAAGTTCATCCTTCTGTGTTCCAGCATGATTTTCCTGG
1 CTGGTTTGCGTCTTGCCTCCTGCTCCAAGTTCATCCTTCTGTGTTCCAGCATGATTTTCCTGG
4069 CT
1 CT
4071 TCTTTAATCA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.09, C:0.30, G:0.20, T:0.40
Consensus pattern (63 bp):
CTGGTTTGCGTCTTGCCTCCTGCTCCAAGTTCATCCTTCTGTGTTCCAGCATGATTTTCCTGG
Done.