Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00771.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2192
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.35


Found at i:38 original size:3 final size:3

Alignment explanation


    Indices: 32--66  Score: 70
    Period size: 3  Copynumber: 11.7  Consensus size: 3

         22 ATTATTAGTC

                                                          
         32 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
          1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC

         67 CCCTTATATA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   32  1.00

ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66


Consensus pattern (3 bp):   
TCT

Found at i:1279 original size:18 final size:18

Alignment explanation


    Indices: 1252--1298  Score: 76
    Period size: 18  Copynumber: 2.6  Consensus size: 18

       1242 CCATGCTATA

                 *            
       1252 GATTCTAGTGATTCTGAT
          1 GATTCAAGTGATTCTGAT

                              
       1270 GATTCAAGTGATTCTGAT
          1 GATTCAAGTGATTCTGAT

              *        
       1288 GAATCAAGTGA
          1 GATTCAAGTGA

       1299 GGGAGAGTGC


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  18   27  1.00

ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36


Consensus pattern (18 bp):   
GATTCAAGTGATTCTGAT
Done.