Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00773.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 434

Length: 724
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38


Found at i:489 original size:6 final size:6

Alignment explanation


    Indices: 449--487  Score: 71
    Period size: 6  Copynumber: 6.7  Consensus size: 6

        439 TTGCAGCTTC

                                                          
        449 TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTT-T TTTT
          1 TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTT

        488 TTGAGGAACT


Statistics
Matches: 33,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
   5    5  0.15
   6   28  0.85

ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87


Consensus pattern (6 bp):   
TTTTGT
Done.