Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00776.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5800
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34


Found at i:4460 original size:12 final size:13

Alignment explanation


    Indices: 4443--4471  Score: 51
    Period size: 12  Copynumber: 2.3  Consensus size: 13

       4433 CCTTCATACT

                         
       4443 CAATAAAA-TTCC
          1 CAATAAAATTTCC

                         
       4455 CAATAAAATTTCC
          1 CAATAAAATTTCC

                
       4468 CAAT
          1 CAAT

       4472 TGCATCGCCA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12    8  0.50
  13    8  0.50

ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28


Consensus pattern (13 bp):   
CAATAAAATTTCC
Done.