Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00782.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1915
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34


Found at i:54 original size:9 final size:9

Alignment explanation


    Indices: 40--69  Score: 60
    Period size: 9  Copynumber: 3.3  Consensus size: 9

         30 TTTGTTTGAG

                     
         40 GAAGAAAGA
          1 GAAGAAAGA

                     
         49 GAAGAAAGA
          1 GAAGAAAGA

                     
         58 GAAGAAAGA
          1 GAAGAAAGA

               
         67 GAA
          1 GAA

         70 AGCCCAGAAG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   21  1.00

ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00


Consensus pattern (9 bp):   
GAAGAAAGA
Done.