Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00783.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3331
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30


Found at i:3050 original size:124 final size:124

Alignment explanation


    Indices: 2830--3077  Score: 496
    Period size: 124  Copynumber: 2.0  Consensus size: 124

       2820 GAAGATAGTG

                                                                             
       2830 GAGGTTCTTCATTCCAGTTTCAACAGCCTTATAACATGGTTGATAGGCTAGGAAATATTCTCAAA
          1 GAGGTTCTTCATTCCAGTTTCAACAGCCTTATAACATGGTTGATAGGCTAGGAAATATTCTCAAA

                                                                       
       2895 GGAGTGGCAAGTTATCTGTTTACTCCCTATACGGGAGGAGAAACCATCAGATGAGAAGT
         66 GGAGTGGCAAGTTATCTGTTTACTCCCTATACGGGAGGAGAAACCATCAGATGAGAAGT

                                                                             
       2954 GAGGTTCTTCATTCCAGTTTCAACAGCCTTATAACATGGTTGATAGGCTAGGAAATATTCTCAAA
          1 GAGGTTCTTCATTCCAGTTTCAACAGCCTTATAACATGGTTGATAGGCTAGGAAATATTCTCAAA

                                                                       
       3019 GGAGTGGCAAGTTATCTGTTTACTCCCTATACGGGAGGAGAAACCATCAGATGAGAAGT
         66 GGAGTGGCAAGTTATCTGTTTACTCCCTATACGGGAGGAGAAACCATCAGATGAGAAGT

       3078 CGGCCAGCAC


Statistics
Matches: 124,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 124  124  1.00

ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28


Consensus pattern (124 bp):   
GAGGTTCTTCATTCCAGTTTCAACAGCCTTATAACATGGTTGATAGGCTAGGAAATATTCTCAAA
GGAGTGGCAAGTTATCTGTTTACTCCCTATACGGGAGGAGAAACCATCAGATGAGAAGT
Done.