Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00784.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 831

Length: 1385
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29


Found at i:144 original size:3 final size:3

Alignment explanation


    Indices: 136--169  Score: 68
    Period size: 3  Copynumber: 11.3  Consensus size: 3

        126 TAATCCTATC

                                                         
        136 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
          1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T

        170 TTATGGGTCT


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   31  1.00

ACGTcount: A:0.32, C:0.32, G:0.00, T:0.35


Consensus pattern (3 bp):   
TCA

Found at i:1258 original size:14 final size:15

Alignment explanation


    Indices: 1239--1272  Score: 52
    Period size: 14  Copynumber: 2.3  Consensus size: 15

       1229 AGCTTGCATT

                           
       1239 TGAAAAACCGAAG-A
          1 TGAAAAACCGAAGCA

                    *      
       1253 TGAAAAACTGAAGCA
          1 TGAAAAACCGAAGCA

                 
       1268 TGAAA
          1 TGAAA

       1273 TTCAATGTAC


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  14   12  0.67
  15    6  0.33

ACGTcount: A:0.56, C:0.12, G:0.21, T:0.12


Consensus pattern (15 bp):   
TGAAAAACCGAAGCA

Done.