Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00785.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3285
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.31


Found at i:3122 original size:41 final size:41

Alignment explanation


    Indices: 3077--3159  Score: 166
    Period size: 41  Copynumber: 2.0  Consensus size: 41

       3067 ACCAACACTT

                                                     
       3077 AGCTTCATAGTTAATGCTAATCTAAATAGATGTACATGGAA
          1 AGCTTCATAGTTAATGCTAATCTAAATAGATGTACATGGAA

                                                     
       3118 AGCTTCATAGTTAATGCTAATCTAAATAGATGTACATGGAA
          1 AGCTTCATAGTTAATGCTAATCTAAATAGATGTACATGGAA

             
       3159 A
          1 A

       3160 CACGTGTAGT


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  41   42  1.00

ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31


Consensus pattern (41 bp):   
AGCTTCATAGTTAATGCTAATCTAAATAGATGTACATGGAA
Done.