Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00790.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 884

Length: 1474
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32


Found at i:852 original size:26 final size:26

Alignment explanation


    Indices: 823--958  Score: 227
    Period size: 26  Copynumber: 5.2  Consensus size: 26

        813 TGGTACAAAT

                          *           
        823 TGATAATAGGTTAGATAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                                   *  
        849 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                                   *  
        875 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                   *                  
        901 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                   *                  
        927 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                  
        953 TGATAA
          1 TGATAA

        959 GAATTTCATG


Statistics
Matches: 106,  Mismatches: 4, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26  106  1.00

ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37


Consensus pattern (26 bp):   
TGATAATAGGTTAGGTAAATGTTTCA

Done.