Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00792.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3078
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37


Found at i:1522 original size:16 final size:15

Alignment explanation


    Indices: 1501--1552  Score: 52
    Period size: 16  Copynumber: 3.3  Consensus size: 15

       1491 AGGGTGGAAA

                            
       1501 GAAAATTGGAAGGATG
          1 GAAAATT-GAAGGATG

                         *  
       1517 GAAAATTGAAGGGGTG
          1 GAAAATTGAA-GGATG

                   *        
       1533 GAAAACTAGAAGGAT-
          1 GAAAA-TTGAAGGATG

                 
       1548 GAAAA
          1 GAAAA

       1553 ACATAATTTT


Statistics
Matches: 31,  Mismatches: 3, Indels: 5
        0.79            0.08        0.13

Matches are distributed among these distances:
  15    8  0.26
  16   19  0.61
  17    4  0.13

ACGTcount: A:0.48, C:0.02, G:0.35, T:0.15


Consensus pattern (15 bp):   
GAAAATTGAAGGATG
Done.