Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00800.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2517
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31


Found at i:1108 original size:37 final size:36

Alignment explanation


    Indices: 1056--1130  Score: 105
    Period size: 37  Copynumber: 2.1  Consensus size: 36

       1046 TCAATTTCAC

                    *                *           
       1056 AATTCTATTGTTCTTAAATATCACAGATTCAACTGAT
          1 AATTCTATGGTTCTTAAATATCACAAATTCAA-TGAT

                *            *                  
       1093 AATTTTATGGTTCTTAAGTATCACAAATTCAATGAT
          1 AATTCTATGGTTCTTAAATATCACAAATTCAATGAT

              
       1129 AA
          1 AA

       1131 GTAAGGAAGA


Statistics
Matches: 34,  Mismatches: 4, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  36    6  0.18
  37   28  0.82

ACGTcount: A:0.37, C:0.13, G:0.09, T:0.40


Consensus pattern (36 bp):   
AATTCTATGGTTCTTAAATATCACAAATTCAATGAT
Done.