Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01023.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 711

Length: 1185
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.36


Found at i:331 original size:23 final size:21

Alignment explanation


    Indices: 291--334  Score: 61
    Period size: 23  Copynumber: 2.0  Consensus size: 21

        281 ATATGTATAT

                         *       
        291 AAATATAAAATAAGAGTAAAA
          1 AAATATAAAATAAAAGTAAAA

                                   
        312 AAATAATAATAATAAAAGTAAAA
          1 AAAT-ATAA-AATAAAAGTAAAA

        335 TGAACAAGAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  21    4  0.20
  22    4  0.20
  23   12  0.60

ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20


Consensus pattern (21 bp):   
AAATATAAAATAAAAGTAAAA
Done.