Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00809.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 658

Length: 1097
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34


Found at i:890 original size:25 final size:25

Alignment explanation


    Indices: 861--908  Score: 87
    Period size: 25  Copynumber: 1.9  Consensus size: 25

        851 ATATCAGCTA

                   *                 
        861 CAGAGAATGCATTGTTGAGATTCAG
          1 CAGAGAAGGCATTGTTGAGATTCAG

                                   
        886 CAGAGAAGGCATTGTTGAGATTC
          1 CAGAGAAGGCATTGTTGAGATTC

        909 GCAATAAATT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   22  1.00

ACGTcount: A:0.31, C:0.12, G:0.29, T:0.27


Consensus pattern (25 bp):   
CAGAGAAGGCATTGTTGAGATTCAG
Done.