Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00816.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 381

Length: 635
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.28


Found at i:308 original size:12 final size:12

Alignment explanation


    Indices: 287--323  Score: 56
    Period size: 12  Copynumber: 3.1  Consensus size: 12

        277 AAAGAAATAA

                 *      
        287 AAGAGGAGAAAG
          1 AAGAGAAGAAAG

                        
        299 AAGAGAAGAAAG
          1 AAGAGAAGAAAG

                   *    
        311 AAGAGAAAAAAG
          1 AAGAGAAGAAAG

             
        323 A
          1 A

        324 TGATGAAAAA


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  12   23  1.00

ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00


Consensus pattern (12 bp):   
AAGAGAAGAAAG
Done.