Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00819.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3827
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.31


Found at i:138 original size:3 final size:3

Alignment explanation


    Indices: 132--162  Score: 62
    Period size: 3  Copynumber: 10.3  Consensus size: 3

        122 TTTACAACAA

                                                     
        132 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC C
          1 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC C

        163 TTCTTCTTCT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   28  1.00

ACGTcount: A:0.32, C:0.68, G:0.00, T:0.00


Consensus pattern (3 bp):   
CAC

Done.