Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga14g00854.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3937
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Found at i:3453 original size:482 final size:482
Alignment explanation
Indices: 2548--3513 Score: 1932
Period size: 482 Copynumber: 2.0 Consensus size: 482
2538 AAAATGGGAG
2548 TCAAAGTAAATGGAAATTGTATTGAGAAATTCTGGTGGTAGAGACTAAGAGAGTATTAGTGGTTA
1 TCAAAGTAAATGGAAATTGTATTGAGAAATTCTGGTGGTAGAGACTAAGAGAGTATTAGTGGTTA
2613 TAAGAAGGTGGGGAACTGAAAGAGCATCAATACTGAGGAAAGGCTTAAAACTTGATATGCAAGTG
66 TAAGAAGGTGGGGAACTGAAAGAGCATCAATACTGAGGAAAGGCTTAAAACTTGATATGCAAGTG
2678 ATTATAGGTATAGACCATAAATCCATGAGATAAATTGAGCTTCTAAATATATCCATACAACGAAA
131 ATTATAGGTATAGACCATAAATCCATGAGATAAATTGAGCTTCTAAATATATCCATACAACGAAA
2743 AACCCTAATAGAACCTTAAAGCAATATCCATTATTCATCCTTGTTGGAAGAGATTGTCTTTAGAG
196 AACCCTAATAGAACCTTAAAGCAATATCCATTATTCATCCTTGTTGGAAGAGATTGTCTTTAGAG
2808 TTAAATTGCATATACCCCTCCTTCCTTGAGTCAAAATAGATGACCTTCCCAATGAACAGAGATTA
261 TTAAATTGCATATACCCCTCCTTCCTTGAGTCAAAATAGATGACCTTCCCAATGAACAGAGATTA
2873 TGTCATTGATCTAGAATTAAAAAGCTCATCACCAAGTTATTTCAATCCATCAACTTATTGCAATC
326 TGTCATTGATCTAGAATTAAAAAGCTCATCACCAAGTTATTTCAATCCATCAACTTATTGCAATC
2938 ACTAAAACACTTGTAAGGTGTGTAATGGAAAAAACATAAGGCTCAAAGATGTCCGATGAAATAAT
391 ACTAAAACACTTGTAAGGTGTGTAATGGAAAAAACATAAGGCTCAAAGATGTCCGATGAAATAAT
3003 TTAGTGTTAGAATTTGCAATTTGTGTA
456 TTAGTGTTAGAATTTGCAATTTGTGTA
3030 TCAAAGTAAATGGAAATTGTATTGAGAAATTCTGGTGGTAGAGACTAAGAGAGTATTAGTGGTTA
1 TCAAAGTAAATGGAAATTGTATTGAGAAATTCTGGTGGTAGAGACTAAGAGAGTATTAGTGGTTA
3095 TAAGAAGGTGGGGAACTGAAAGAGCATCAATACTGAGGAAAGGCTTAAAACTTGATATGCAAGTG
66 TAAGAAGGTGGGGAACTGAAAGAGCATCAATACTGAGGAAAGGCTTAAAACTTGATATGCAAGTG
3160 ATTATAGGTATAGACCATAAATCCATGAGATAAATTGAGCTTCTAAATATATCCATACAACGAAA
131 ATTATAGGTATAGACCATAAATCCATGAGATAAATTGAGCTTCTAAATATATCCATACAACGAAA
3225 AACCCTAATAGAACCTTAAAGCAATATCCATTATTCATCCTTGTTGGAAGAGATTGTCTTTAGAG
196 AACCCTAATAGAACCTTAAAGCAATATCCATTATTCATCCTTGTTGGAAGAGATTGTCTTTAGAG
3290 TTAAATTGCATATACCCCTCCTTCCTTGAGTCAAAATAGATGACCTTCCCAATGAACAGAGATTA
261 TTAAATTGCATATACCCCTCCTTCCTTGAGTCAAAATAGATGACCTTCCCAATGAACAGAGATTA
3355 TGTCATTGATCTAGAATTAAAAAGCTCATCACCAAGTTATTTCAATCCATCAACTTATTGCAATC
326 TGTCATTGATCTAGAATTAAAAAGCTCATCACCAAGTTATTTCAATCCATCAACTTATTGCAATC
3420 ACTAAAACACTTGTAAGGTGTGTAATGGAAAAAACATAAGGCTCAAAGATGTCCGATGAAATAAT
391 ACTAAAACACTTGTAAGGTGTGTAATGGAAAAAACATAAGGCTCAAAGATGTCCGATGAAATAAT
3485 TTAGTGTTAGAATTTGCAATTTGTGTA
456 TTAGTGTTAGAATTTGCAATTTGTGTA
3512 TC
1 TC
3514 CAAGGCTTGT
Statistics
Matches: 484, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
482 484 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (482 bp):
TCAAAGTAAATGGAAATTGTATTGAGAAATTCTGGTGGTAGAGACTAAGAGAGTATTAGTGGTTA
TAAGAAGGTGGGGAACTGAAAGAGCATCAATACTGAGGAAAGGCTTAAAACTTGATATGCAAGTG
ATTATAGGTATAGACCATAAATCCATGAGATAAATTGAGCTTCTAAATATATCCATACAACGAAA
AACCCTAATAGAACCTTAAAGCAATATCCATTATTCATCCTTGTTGGAAGAGATTGTCTTTAGAG
TTAAATTGCATATACCCCTCCTTCCTTGAGTCAAAATAGATGACCTTCCCAATGAACAGAGATTA
TGTCATTGATCTAGAATTAAAAAGCTCATCACCAAGTTATTTCAATCCATCAACTTATTGCAATC
ACTAAAACACTTGTAAGGTGTGTAATGGAAAAAACATAAGGCTCAAAGATGTCCGATGAAATAAT
TTAGTGTTAGAATTTGCAATTTGTGTA
Done.