Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga14g00854.F2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3536
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35
Found at i:3052 original size:482 final size:482
Alignment explanation
Indices: 2147--3112 Score: 1932
Period size: 482 Copynumber: 2.0 Consensus size: 482
2137 AAAATGGGAG
2147 TCAAAGTAAATGGAAATTGTATTGAGAAATTCTGGTGGTAGAGACTAAGAGAGTATTAGTGGTTA
1 TCAAAGTAAATGGAAATTGTATTGAGAAATTCTGGTGGTAGAGACTAAGAGAGTATTAGTGGTTA
2212 TAAGAAGGTGGGGAACTGAAAGAGCATCAATACTGAGGAAAGGCTTAAAACTTGATATGCAAGTG
66 TAAGAAGGTGGGGAACTGAAAGAGCATCAATACTGAGGAAAGGCTTAAAACTTGATATGCAAGTG
2277 ATTATAGGTATAGACCATAAATCCATGAGATAAATTGAGCTTCTAAATATATCCATACAACGAAA
131 ATTATAGGTATAGACCATAAATCCATGAGATAAATTGAGCTTCTAAATATATCCATACAACGAAA
2342 AACCCTAATAGAACCTTAAAGCAATATCCATTATTCATCCTTGTTGGAAGAGATTGTCTTTAGAG
196 AACCCTAATAGAACCTTAAAGCAATATCCATTATTCATCCTTGTTGGAAGAGATTGTCTTTAGAG
2407 TTAAATTGCATATACCCCTCCTTCCTTGAGTCAAAATAGATGACCTTCCCAATGAACAGAGATTA
261 TTAAATTGCATATACCCCTCCTTCCTTGAGTCAAAATAGATGACCTTCCCAATGAACAGAGATTA
2472 TGTCATTGATCTAGAATTAAAAAGCTCATCACCAAGTTATTTCAATCCATCAACTTATTGCAATC
326 TGTCATTGATCTAGAATTAAAAAGCTCATCACCAAGTTATTTCAATCCATCAACTTATTGCAATC
2537 ACTAAAACACTTGTAAGGTGTGTAATGGAAAAAACATAAGGCTCAAAGATGTCCGATGAAATAAT
391 ACTAAAACACTTGTAAGGTGTGTAATGGAAAAAACATAAGGCTCAAAGATGTCCGATGAAATAAT
2602 TTAGTGTTAGAATTTGCAATTTGTGTA
456 TTAGTGTTAGAATTTGCAATTTGTGTA
2629 TCAAAGTAAATGGAAATTGTATTGAGAAATTCTGGTGGTAGAGACTAAGAGAGTATTAGTGGTTA
1 TCAAAGTAAATGGAAATTGTATTGAGAAATTCTGGTGGTAGAGACTAAGAGAGTATTAGTGGTTA
2694 TAAGAAGGTGGGGAACTGAAAGAGCATCAATACTGAGGAAAGGCTTAAAACTTGATATGCAAGTG
66 TAAGAAGGTGGGGAACTGAAAGAGCATCAATACTGAGGAAAGGCTTAAAACTTGATATGCAAGTG
2759 ATTATAGGTATAGACCATAAATCCATGAGATAAATTGAGCTTCTAAATATATCCATACAACGAAA
131 ATTATAGGTATAGACCATAAATCCATGAGATAAATTGAGCTTCTAAATATATCCATACAACGAAA
2824 AACCCTAATAGAACCTTAAAGCAATATCCATTATTCATCCTTGTTGGAAGAGATTGTCTTTAGAG
196 AACCCTAATAGAACCTTAAAGCAATATCCATTATTCATCCTTGTTGGAAGAGATTGTCTTTAGAG
2889 TTAAATTGCATATACCCCTCCTTCCTTGAGTCAAAATAGATGACCTTCCCAATGAACAGAGATTA
261 TTAAATTGCATATACCCCTCCTTCCTTGAGTCAAAATAGATGACCTTCCCAATGAACAGAGATTA
2954 TGTCATTGATCTAGAATTAAAAAGCTCATCACCAAGTTATTTCAATCCATCAACTTATTGCAATC
326 TGTCATTGATCTAGAATTAAAAAGCTCATCACCAAGTTATTTCAATCCATCAACTTATTGCAATC
3019 ACTAAAACACTTGTAAGGTGTGTAATGGAAAAAACATAAGGCTCAAAGATGTCCGATGAAATAAT
391 ACTAAAACACTTGTAAGGTGTGTAATGGAAAAAACATAAGGCTCAAAGATGTCCGATGAAATAAT
3084 TTAGTGTTAGAATTTGCAATTTGTGTA
456 TTAGTGTTAGAATTTGCAATTTGTGTA
3111 TC
1 TC
3113 CAAGGCTTGT
Statistics
Matches: 484, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
482 484 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (482 bp):
TCAAAGTAAATGGAAATTGTATTGAGAAATTCTGGTGGTAGAGACTAAGAGAGTATTAGTGGTTA
TAAGAAGGTGGGGAACTGAAAGAGCATCAATACTGAGGAAAGGCTTAAAACTTGATATGCAAGTG
ATTATAGGTATAGACCATAAATCCATGAGATAAATTGAGCTTCTAAATATATCCATACAACGAAA
AACCCTAATAGAACCTTAAAGCAATATCCATTATTCATCCTTGTTGGAAGAGATTGTCTTTAGAG
TTAAATTGCATATACCCCTCCTTCCTTGAGTCAAAATAGATGACCTTCCCAATGAACAGAGATTA
TGTCATTGATCTAGAATTAAAAAGCTCATCACCAAGTTATTTCAATCCATCAACTTATTGCAATC
ACTAAAACACTTGTAAGGTGTGTAATGGAAAAAACATAAGGCTCAAAGATGTCCGATGAAATAAT
TTAGTGTTAGAATTTGCAATTTGTGTA
Done.