Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00860.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3325
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30


Found at i:3110 original size:3 final size:3

Alignment explanation


    Indices: 3104--3141  Score: 67
    Period size: 3  Copynumber: 12.7  Consensus size: 3

       3094 AAAAAAAAAA

                                      *                       
       3104 AAG AAG AAG AAG AAG AAG AAT AAG AAG AAG AAG AAG AA
          1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA

       3142 AAGGAGAGTA


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   33  1.00

ACGTcount: A:0.68, C:0.00, G:0.29, T:0.03


Consensus pattern (3 bp):   
AAG

Done.