Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga14g00867.F5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3598
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.28
Found at i:2229 original size:165 final size:165
Alignment explanation
Indices: 1946--2274 Score: 595
Period size: 165 Copynumber: 2.0 Consensus size: 165
1936 GAAACTCAGT
1946 TTGATGCACCAATAGTCATCTCCACTACACCCGCTTTTGATAATGGAAGGGACAGGCTGGGAAGA
1 TTGATGCACCAATAGTCATCTCCACTACACCCGCTTTTGATAATGGAAGGGACAGGCTGGGAAGA
*
2011 ATGCAATATATGTCAAAGTCTGCAAATGAGCAGAGCTACCGGGAAAGTGTTAAACATGGACAAGA
66 ATGCAATATATGTCAAAGTCTGCAAATGAGCAGAGCTACCAGGAAAGTGTTAAACATGGACAAGA
*
2076 AATGCAAACCGGTTCTTTCAGGCATGGAGATGATA
131 AATGCAAACCAGTTCTTTCAGGCATGGAGATGATA
* * *
2111 TTGATGTACCAATAGTCGTCTCCACTACATCCGCTTTTGATAATGGAAGGGACAGGCTGGGAAGA
1 TTGATGCACCAATAGTCATCTCCACTACACCCGCTTTTGATAATGGAAGGGACAGGCTGGGAAGA
* *
2176 ATGCAATATATGTCAAAGTCTGGAAATGAGCAGAGCTACCAGGAAATTGTTAAACATGGACAAGA
66 ATGCAATATATGTCAAAGTCTGCAAATGAGCAGAGCTACCAGGAAAGTGTTAAACATGGACAAGA
2241 AATGCAAACCAGTTCTTTCAGGCATGGAGATGAT
131 AATGCAAACCAGTTCTTTCAGGCATGGAGATGAT
2275 GTTGGGCTTC
Statistics
Matches: 157, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
165 157 1.00
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (165 bp):
TTGATGCACCAATAGTCATCTCCACTACACCCGCTTTTGATAATGGAAGGGACAGGCTGGGAAGA
ATGCAATATATGTCAAAGTCTGCAAATGAGCAGAGCTACCAGGAAAGTGTTAAACATGGACAAGA
AATGCAAACCAGTTCTTTCAGGCATGGAGATGATA
Done.