Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00869.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2149
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33


Found at i:640 original size:12 final size:12

Alignment explanation


    Indices: 620--651  Score: 55
    Period size: 12  Copynumber: 2.7  Consensus size: 12

        610 TTTTGGATTA

                *       
        620 TTTTGATGTTCC
          1 TTTTTATGTTCC

                        
        632 TTTTTATGTTCC
          1 TTTTTATGTTCC

                    
        644 TTTTTATG
          1 TTTTTATG

        652 CAATGTGGAT


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.09, C:0.12, G:0.12, T:0.66


Consensus pattern (12 bp):   
TTTTTATGTTCC
Done.