Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00875.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6445
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.39


Found at i:5383 original size:22 final size:21

Alignment explanation


    Indices: 5351--5393  Score: 59
    Period size: 22  Copynumber: 2.0  Consensus size: 21

       5341 GATTAATATT

                  *               
       5351 TTATATTTAATATTTATAAATA
          1 TTATATATAAT-TTTATAAATA

                          *      
       5373 TTATATATAATTTTTTAAATA
          1 TTATATATAATTTTATAAATA

       5394 ACAATAAATA


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  21    9  0.47
  22   10  0.53

ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56


Consensus pattern (21 bp):   
TTATATATAATTTTATAAATA
Done.