Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00900.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2272
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33


Found at i:1940 original size:136 final size:137

Alignment explanation


    Indices: 1695--1980  Score: 520
    Period size: 136  Copynumber: 2.1  Consensus size: 137

       1685 GAGTAGTCTC

                                                                             
       1695 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

                                                                  *          
       1760 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
         66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC

               *   
       1825 ACTGTTA
        131 ACTATTA

                                    *                                        
       1832 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

                                                                             
       1896 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
         66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC

                   
       1961 ACTATTA
        131 ACTATTA

              **         
       1968 CCTGAATGGGCTT
          1 CCCAAATGGGCTT

       1981 AGGCCCAATG


Statistics
Matches: 144,  Mismatches: 5, Indels: 1
        0.96            0.03        0.01

Matches are distributed among these distances:
 136  124  0.86
 137   20  0.14

ACGTcount: A:0.25, C:0.19, G:0.24, T:0.31


Consensus pattern (137 bp):   
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
ACTATTA
Done.