Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga14g00919.P1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3798
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.32
Found at i:3675 original size:189 final size:187
Alignment explanation
Indices: 3304--3679 Score: 725
Period size: 189 Copynumber: 2.0 Consensus size: 187
3294 GGAGATCCCT
3304 GTATTATAGAGATTGTATCAAATTAGTCCCTATATTATTACAAAGAATCAAATAAGTCTAAATTG
1 GTATTATAGAGATTGTATCAAATTAGTCCCTATATTATTACAAAGAATCAAATAAGTCTAAATTG
3369 TATCATATCTAACATTTGCTGTAAAAAAAAAATCTTGAATTTTTTTTCCAATTGCAATTTAATTT
66 TATCATATCTAACATTTGCTGTAAAAAAAAAATCTTGAATTTTTTTTCCAATTGCAATTTAATTT
3434 CAAATAAAAAGATTTCATTAAATGGTATAGAGGTTAAATTGATTCATTTAATAATAG
131 CAAATAAAAAGATTTCATTAAATGGTATAGAGGTTAAATTGATTCATTTAATAATAG
*
3491 GTATTATAGAGATTGTATCAAATTAGTCCCTATATTATTACAAAGAATCAAATAAGTTTAAATTG
1 GTATTATAGAGATTGTATCAAATTAGTCCCTATATTATTACAAAGAATCAAATAAGTCTAAATTG
3556 TATCATATCTAACATTTGCTGTAAAAAAAAAAAATCTTGAATTTTTTTTCCAATTGCAATTTAAT
66 TATCATATCTAACATTTGCTGT--AAAAAAAAAATCTTGAATTTTTTTTCCAATTGCAATTTAAT
3621 TTCAAATAAAAAGATTTCATTAAATGGTATAGAGGTTAAATTGATTCATTTAATAATAG
129 TTCAAATAAAAAGATTTCATTAAATGGTATAGAGGTTAAATTGATTCATTTAATAATAG
3680 AGGGGTTAAT
Statistics
Matches: 186, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
187 86 0.46
189 100 0.54
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.39
Consensus pattern (187 bp):
GTATTATAGAGATTGTATCAAATTAGTCCCTATATTATTACAAAGAATCAAATAAGTCTAAATTG
TATCATATCTAACATTTGCTGTAAAAAAAAAATCTTGAATTTTTTTTCCAATTGCAATTTAATTT
CAAATAAAAAGATTTCATTAAATGGTATAGAGGTTAAATTGATTCATTTAATAATAG
Done.